I'm
Tathagata Debnath

I'm Computational Biologist

About Me

I am a graduate student at New Mexico State University, currently doing my Ph.D. in Computer Science, with a focus in Computational Biology, Bioinformatics, and Data Science. I am also helping biologists with biological data analysis.

Skills

Programming Experiance

Always ready to try hands-on new and emerging technologies

R

Python

C/C++

GIT

SQL

Java

HTML,CSS, Javascript

MATLAB

PHP

Docker

Android Studio

Swift

Bioinformatics Software

Set of tools used during different projrects

Samtools

BCFtools

STAR

KEGG

DAVID

GATK

BUSCO

Picard

Mega

Singularity

bedtools

RSEM

tabix

Gviz

Integrative Genomics Viewer

gprofiler2

rMATS

ASPLI

DESeq2

DEXseq

Blast2GO

MUMmer4

What I Do

Enthusiastic planning, meticulous design, and dynamic execution

DATA SCIENCE

Fast Optimal Circular Clustering

Circular Silhouette

EF-index

RASIT

BIOINFORMATICS

Transcriptomics

Proteomics

Phosphoproteomics

Genome Assembly

Alternative Splicing

COMPUTATIONAL BIOLOGY

Statistical Model Design

Machine Learning

Artificial Intelligence

Biological Big Data Analytics

Projects

Publications

Lines of Code

9000

Timeline

My journey so far

Academic experiences with some milestones are summed up here:

Research Assistant Computer Science Designed Number of Cluster detection Algorithm and Clustering Algorithm for one dimentional data. Designing statistical methods for Alternate Splicing detection in Transcriptomics data.

May 2019 - Present

Research Assistant Biology Worked on BGE cell sequencing and TEP gene identification. Phospoprotiomics and Protiomics study of Schistosomiasis infection on BS90 and BBO2 snails. Transcriptomics analysis of P.acuta snails in different environments.

September 2021 - Present

Teaching Assistant Computer Science Assisted professors on (BIOL 566) Advanced Bioinformatics and NCBI Database , (CS 372) Data Structure and Algorithms, (CS 570) Analysis of Algorithms, (CS 273) Machine Programming and Organisation, (CS 151) C++, (CS 475) Artificial Inteligence 1, (CS 172) Java cources.

August 2018 - May 2021, January 2024 - Present

Ph.D. in Computer Science Pursuing Ph.D. in Computer Science with a focus on Computational Biology and Bioinformatics from the Department of Computer Science at NMSU.

August 2018 - Present

Other organisational activity Worked as Precident and Vice President in different organisations like Computer Science Graduate Student Organisation and Indian Students Association. As a part of the work helped different students.

2018 - 2022

Pre Doc V.Research Associate Worked on Medical Image Processing and applied Deep Neural Networks models. Designed algorithms for Number of Cluster detection in images.

July 2017 - July 2018

Masters Computer Science Completed the Masters in Computer Science from the department of Computer Science and Engineering at Tripura University.

August 2015 - June 2017

Bachelors Computer Science Earned the Bachelors in Computer Science from the department of Computer Science and Engineering at National Institute of Technology Agartala. As a part of the final year project developed an Android App to assist academic activity at NITA.

I'm Tathagata Debnath